BEAST - The-Bioinformatics-Group/Albiorix GitHub Wiki

Command(s):

• beast.sh
• qbeast.sh
• beast2.sh
• beast_2.1.3.sh
• beast_2.3.0.sh
• beast_2.3.1.sh

Installed in:

• /usr/local/bin/
• /usr/local/bin/BEASTvX.X.X/bin

Notes:

These scripts are used to submit BEAST and BEAST2 analyses to the queue system. The scripts accepts any options the regular program takes and also requires the name of an input file.

To run the program use the following command:

[mtop@albiorix ~]$ beast.sh <NAME_OF_XML_FILE>

qbeast.sh starts a non-interactive analyses that don't send any output to your screen.

beast.sh runs on the sandbox queue, and beast2.sh runs on any queue.