QC Kimel staff - TIGRLab/documentation GitHub Wiki

In progress. :cat:

This will be a page with information about how to deal with various QC html page and Dashboard-related issues (hopefully, how to solve them).

General info

1. purpose of QC
2. how we get data in
3. how to determine expected acquisitions (see study setup)
4. how to set 'standards'
5. how checklist.csv presently works
6. how blacklist.csv presently works
7. what to do on git
8. how to skip QC
9. how to run pipelines manually (see pipelines link)

html QC pages

1. missing scans (but in system: regex - how to do a dryrun)
2. missing scans (not in system: check XNAT, FTP server, special processes for non-CAMH data)
3. images not rendering
4. tech notes not linked
5. how to delete html page / regenerate html page
6. how to rename incorrectly named participant (scans.csv, which is upstream of XNAT)
7. delete all participant data from file system
8. run a test

Dashboard

1. how to add metric
2. need to initialize all READMEs
3. how to get a regenerated html page into the Dashboard