External Databases - SysBioChalmers/RAVEN GitHub Wiki
External Databases
RAVEN versions are bundled and therefore compatible with particular KEGG and MetaCyc versions. The users having KEGG FTP Subscription and intending to build their own KEGG database can follow this guide. Several previous RAVEN versions contained The Human Metabolic Reaction (HMR) genome-scale metabolic model, which can now be found in its separate repository.
| RAVEN version | KEGG Release | MetaCyc version | HMR version |
|---|---|---|---|
| v1.00 - v1.9.0 | 58.1 | n/a | n/a |
| v1.9.1 | 80.0* | n/a | n/a |
| v2.00-alpha | 82.0 | n/a | n/a |
| v2.00-rc.1 | 82.0 | v21.0 | v2.00 |
| v2.00-rc.1.1 - v2.0.2 | 82.0 | v21.0 | v2.00 |
| v2.0.3 - v2.0.4 | 87.1 | v21.0 | v2.00 |
| v2.1.0 - v2.2.1 | 87.1 | v22.5 | v2.00 |
| v2.2.2 | 87.1 | v22.5 | n/a |
| v2.3.0-v2.3.1 | 91.0 | v22.5 | n/a |
| v2.4.0-current | 94.0 | v23.5 | n/a |
* - pre-trained HMMs are not available to download due to incomplete information used to generate KEGG *.mat files