Example Output - StephenFordham/BacGenomePipeline GitHub Wiki

Example Output

Assembly of extensively-drug resistant (XDR) strain Klebsiella pneumoniae ATCC700721
assembly.gfa file in flye directory rendered via Bandage

Figure 1. Whole genome assembly XDR of K. pneumoniae ATCC700721
1 completely closed chromosome
5 completely closed plasmids


Figure 2 Sample AMR data available via amr_dir

Figure 3 Sample virulence gene data obtained when the entire pipeline or the annotaion portion of the pipeline runs


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