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Welcome to the nanoQC wiki!

This wiki describes the directory structure, workflow, and output locations for the nanoQC.smk and nanoQC_summary.smk Snakemake pipelines.

nanoQC.smk: Main Snakefile, defines all rules for filtering, assembly, annotation, and QC. nanoQC_summary.smk: Included by nanoQC.smk contains Python functions and rules to aggregate and summarize QC metrics from all too