lengths - SimonHegele/SSfSBT GitHub Wiki
Basic read length distribution analysis for one or multiple FASTA/FASTQ-files
usage: lengths [-h] [-c] [-s] [-p] [-t] files [files ...]
Basic read length distribution analysis.
positional arguments:
files FASTA/FASTQ-file(s)
options:
-h, --help show this help message and exit
-c , --colors Hexcodes for plotting
-s , --scale y-axis scale plots [default: linear]
-p , --prefix prefix for output-files [default: ssfsbt.lengths]
-t , --threads number of parallel threads to use for counting [default: 1]
Examplary output:
File # Sequences # Bases Min len Mean len Max len Std
0 halc.fasta 1000000 1464965219 141 1464 10655 932
1 halc_s.fasta 1154199 1275200520 100 1104 5937 850
2 halc_t.fasta 999867 1348884260 14 1349 8322 885