CARMEN - SMRUCC/GCModeller GitHub Wiki

title: CARMEN tags: [maunal, tools] date: 7/27/2016 6:40:15 PM

GCModeller [version 1.0.0.0]

Module AssemblyName: file:///G:/GCModeller/manual/bin/CARMEN.exe Root namespace: CARMENTools.CLI

All of the command that available in this program has been list below:

Function API Info
/Export.Anno
--lstId.Downloads Download the Avaliable organism name And available pathways' name.
--Reconstruct.KEGG.Online

Commands

Help for command '/Export.Anno':

Prototype: CARMENTools.CLI::Int32 ExportAnno(Microsoft.VisualBasic.CommandLine.CommandLine)

  Information:  
  Usage:        G:\GCModeller\manual\bin\CARMEN.exe /Export.Anno /in <inDIR> [/out <out.Csv>]
  Example:      CARMEN /Export.Anno
Help for command '--lstId.Downloads':

Prototype: CARMENTools.CLI::Int32 DownloadList(Microsoft.VisualBasic.CommandLine.CommandLine)

  Information:  Download the Avaliable organism name And available pathways' name.
  Usage:        G:\GCModeller\manual\bin\CARMEN.exe --lstId.Downloads [/o <out.DIR>]
  Example:      CARMEN --lstId.Downloads
Help for command '--Reconstruct.KEGG.Online':

Prototype: CARMENTools.CLI::Int32 Reconstruct(Microsoft.VisualBasic.CommandLine.CommandLine)

  Information:  
  Usage:        G:\GCModeller\manual\bin\CARMEN.exe --Reconstruct.KEGG.Online /sp <organism> [/pathway <KEGG.pathwayId> /out <outDIR>]
  Example:      CARMEN --Reconstruct.KEGG.Online

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