Home - Russel88/DAtest GitHub Wiki
Introduction
Installation
How to use this package
- A typical workflow
- Understand output of the testDA function
- Main functions
- Paired or blocked data
- Covariates
- Multi-class predictors
- Absolute abundances or external normalization
- Large datasets (more than 2k features)
- If you have a phyloseq object
Methods
Extra features
- Pre-process data
- Plot p-value histograms for all the non-spiked features
- Post-hoc tests for linear models and ANOVAs
- Test significance of covariates
- Adding user-defined methods
- Passing arguments to the different tests
Bugs or ideas?
- If you find bugs or have suggestions for features, please post them as GitHub issues