KnetMiner API endpoints - Rothamsted/knetminer GitHub Wiki

KnetMiner itself is driven under-the-hood by a java REST API (using Spring autowiring), and various API endpoints that generate interactive knetworks (e.g., genepage) and JSON data (genome, network, evidence, etc. API endpoints).

Further details available here.

Examples:

TODO: require updates to new prod instances.

• Wheat genepage - http://knetminer.rothamsted.ac.uk/wheatknet/genepage?list=MFT

• Rice search - http://knetminer.rothamsted.ac.uk/riceknet/genome?list=ASR3,BADH1 (gene list search)

• Rice - advanced search - http://knetminer.rothamsted.ac.uk/riceknet/genome?keyword=drought+OR+tolerance&list=ASR3,BADH1 (gene list + keyword search)

• Wheat knetwork json - http://knetminer.rothamsted.ac.uk/wheatknet/network?keyword=dormancy&list=MFT

• count keyword hits (wheat) - https://knetminer.rothamsted.ac.uk/wheatknet/countHits?keyword=germination&list=

• Development endpoint, based on cereals (automatically updated daily, not stable)