metaMS

Version: 1.14.0

Website

https://www.bioconductor.org/packages/release/bioc/html/metaMS.html

Description

This bioconductor package is based on xcms and CAMERA but with a number of differences as it is adapted for GC-MS analysis. Unlike xcms, it performs a pseudospectra based analysis, rather than a feature based analysis, which avoids the alignment stage (which can be difficult in GC-MS data). There is also the ability to create a database of in-house standards. It also contains a wrapper function of xcms and CAMERA for LC-MS analysis and the ability to create a database of standards for automatic annotation of these metabolites.

Functionality

• Preprocessing

Instrument Data Type

• MS/GC-MS
• MS/LC-MS

Approaches

• Untargeted

Computer Skills

Advanced

Software Type

R Package

Interface

Command line interface

Operating System (OS)

• Unix/Linux
• Mac OS
• Windows

Language

R

Dependencies

R (≥ 2.10.0) methods, xcms (≥ 1.35.0), CAMERA

Input Formats - Open

mzXML, netCDF

Input Formats - Proprietary

N/A

Published

2014

Last Updated

2018

License

GPL (≥ 2)

Paper

http://www.ncbi.nlm.nih.gov/pubmed/24656939

PMID

24656939