iontree

Version: 1.24.0

Website

http://www.bioconductor.org/packages/release/bioc/html/iontree.html

Description

Ion fragmentation data analysis, for either LC-MS or DI-MS. Ion trees are constructed for MSn data. A relational database can be constructed for management of the ion tree data. Distance matrices for MS2 data can be constructed to measure spectral similarity.

Functionality

• Other Tools

Instrument Data Type

• MS/LC-MS/LC-MS/MS
• MS/DI-MS/DI-MS/MS

Approaches

Computer Skills

Advanced

Software Type

Package

Interface

Command line interface

Operating System (OS)

• Unix/Linux
• Mac OS
• Windows

Language

R

Dependencies

methods, rJava, RSQLite, XML

Input Formats - Open

mzXML

Input Formats - Proprietary

N/A

Published

2012

Last Updated

2017

License

GPL-2

Paper

PMID