Preprocessing - RASpicer/MetabolomicsTools GitHub Wiki

Software Functionality Instrument Data Type Approaches
ALLocator Preprocessing MS/LC-MS/LC-ESI-MS
alsace Preprocessing DAD/HPLC-DAD
AMDIS Preprocessing MS/GC-MS
AMDORAP Preprocessing MS/LC-MS/Orbitrap LC-MS Untargeted
apLCMS Preprocessing MS/LC-MS/LC-FT-MS Untargeted
ChemoSpec Preprocessing NMR, IR, Raman
cosmiq Preprocessing MS/GC-MS, MS/LC-MS Untargeted
decoMS2 Preprocessing MS/LC-MS Untargeted
FeatureFinderMetabo Preprocessing MS/LC-MS/Centroid LC-MS
flagme Preprocessing MS/GC-MS
GSim Preprocessing NMR/1D NMR, NMR/2D NMR
HayStack Preprocessing MS/LC-MS Untargeted
HCOR Preprocessing MS/LC-MS
Ideom Preprocessing MS/LC-MS
iMet-Q Preprocessing MS/LC-MS
intCor Preprocessing MS/LC-MS
LDA Preprocessing MS/LC-MS Lipidomics
Maui-VIA Preprocessing MS/GC-MS
MeltDB Preprocessing MS/GC-MS/GC-MS/MS, MS/LC-MS
MET-COFEA Preprocessing MS/LC-MS
MET-COFEI Preprocessing MS/GC-MS
MET-IDEA Preprocessing MS/GC-MS, MS/LC-MS Targeted
MET-XAlign Preprocessing MS/LC-MS Untargeted
Metab Preprocessing MS/GC-MS, MS/LC-MS
MetaboliteDetector Preprocessing MS/GC-MS Targeted, Untargeted
MetaDB Preprocessing MS/GC-MS, MS/LC-MS
MetAlign Preprocessing MS/GC-MS, MS/LC-MS Untargeted
metaMS Preprocessing MS/GC-MS, MS/LC-MS Untargeted
MetExtract Preprocessing MS/LC-MS/Centroid LC-MS Untargeted, Isotopic Labelling Analysis
MetTailor Preprocessing MS/GC-MS, MS/LC-MS
MRM-DIFF Preprocessing MS/LC-MS/LC-QqQ-MSMS/LC-MS/LC-QqQ-MS/MS Lipidomics
MRMPROBES Preprocessing MS/GC-MS/GC-QqQ-MSMS/LC-MS/LC-QqQ-MS
MS-DIAL Preprocessing MS/LC-MS/LC-MS/MS Untargeted
Newton Preprocessing NMR/2D 1H, 13C-HSQC NMR
Nmrglue Preprocessing NMR
RAMClustR Preprocessing MS/LC-MS/LC-MS/MS
RANSY/RAMSY Preprocessing MS/GC-MS, MS/LC-MS, NMR
rNMR Preprocessing NMR/1D NMR, NMR/2D NMR
SIMAT Preprocessing MS/GC-MS/GC-MS-SIM Targeted
SOAP-NMR Preprocessing NMR/1H NMR
SpectConnect Preprocessing MS/GC-MS
TargetSearch Preprocessing MS/GC-MS Targeted
X13CMS Preprocessing MS/LC-MS Untargeted, Isotopic Labelling Analysis
XCMS Preprocessing MS/LC-MS/LC-MS/MS, MS/GC-MS Untargeted
xMSanalyzer Preprocessing MS/LC-MS Untargeted
Bayesil Preprocessing, Annotation NMR/1H NMR
EasyLCMS Preprocessing, Annotation MS/LC-MS Targeted
eRah Preprocessing, Annotation MS/GC-MS/GC-TOF/MS, MS/GC-MS/GC-qTOF/MS
LIMSA Preprocessing, Annotation MS/DI-MS/DI-MS/MS, MS/LC-MS Lipidomics
LipidXplorer Preprocessing, Annotation MS/DI-MS/DI-MS/MS Lipidomics
MMSAT Preprocessing, Annotation MS/GC-MS/GC-MS SRM, MS/LC-MS/LC-MS SRM Targeted
MSeasy Preprocessing, Annotation MS/GC-MS
mzMatch Preprocessing, Annotation/MS/Level 3 - Tentative Candidates MS/LC-MS Untargeted
LipidQA Preprocessing, Post-processing, Annotation MS/DI-MS/DI-MS/MS Lipidomics
Automics Preprocessing, Post-Processing, Statistical Analysis NMR/1H NMR