MetaMapp

Version: 0.1.0

Website

http://metamapp.fiehnlab.ucdavis.edu/ocpu/library/MetaMapp2016/www/

Description

MetaMapp uses a combination of KEGG reactant pairs and Tanimoto chemical similarity scores to map small molecules onto pathways to facilitate biological interpretations. There are options to create a chemical similarity map or a chemical and biochemical map using a KEGG RPAIR database. The output is suitable for visualisation in cytoscape. There is also the option of converting F-statistics into a cytoscape node attribute file.

Functionality

• Pathway Analysis

Instrument Data Type

Approaches

Computer Skills

Advanced

Software Type

• Web App

Interface

Web user interface

Operating System (OS)

• Unix/Linux
• Mac OS
• Windows

Language

Dependencies

N/A

Input Formats - Open

List of compounds IDs

Input Formats - Proprietary

N/A

Published

2012

Last Updated

2017

License

Paper

http://www.ncbi.nlm.nih.gov/pubmed/22591066

PMID

22591066