MetScape

Version: 3.1.3

Website

http://metscape.ncibi.org/

Description

MetScape allows for the visualisation of metabolic networks in cytoscape, accepting lists of metabolites or genes as input. These can be visualised as: compound-reaction-enzyme-gene (CREG), compound-reaction (CR), compound-gene (CG) or compound (C) networks. The gene set enrichment tool LRpath can be used for metabolite or gene data enrichment. Metab2MeSH is used to annotate compounds with information from KEGG, PubChem and the literature. There is the option of creating subnetworks and expanding the currently displayed network.

Functionality

• Pathway Analysis

Instrument Data Type

Approaches

Computer Skills

Medium

Software Type

• Cytoscape App

Interface

• Graphical user interface

Operating System (OS)

• Unix/Linux
• Mac OS
• Windows

Language

Java

Dependencies

Cytoscape 3.0

Input Formats - Open

List of compounds

Input Formats - Proprietary

N/A

Published

2010

Last Updated

2017

License

Paper

http://www.ncbi.nlm.nih.gov/pubmed/22135418

PMID

22135418