MetDisease

Version: 1.1.0

Website

http://apps.cytoscape.org/apps/metdisease

Description

This is a cytoscape app for the automatic annotation of metabolites associated with a particular disease. Metab2MeSH is used to do this (it links PubChem compounds to MeSH terms in PubMed articles), allowing for the annotation of metabolites which are not found global metabolome resconstructions e.g. as they are from food/ microbiome.

Functionality

• Pathway Analysis/Disease Annotation

Instrument Data Type

Approaches

Computer Skills

Medium

Software Type

• Cytoscape App

Interface

• Graphical user interface

Operating System (OS)

• Unix/Linux
• Mac OS
• Windows

Language

Java

Dependencies

Cytoscape 3.0

Input Formats - Open

MetScape network/ Network KEGG/PubChem IDs

Input Formats - Proprietary

N/A

Published

2013

Last Updated

2014

License

Paper

http://www.ncbi.nlm.nih.gov/pubmed/24713438

PMID

24713438