MassTRIX

Version: 3

Website

http://masstrix3.helmholtz-muenchen.de/masstrix3/

Description

Mass translator into pathways (MassTrix) provides putative metabolite identification and pathway visualisation using an Apache2 web server. It also provides the ability to map transcriptomics data onto a pathway A list of enzymes/ genes can also be included in the pathway. The user can firstly select the organism of interest from KEGG. KEGG/HMDB/LipidMaps can then be queried for putative metabolite identification and these annotations are then visualised in pathways using the KEGG/API. Gene expression from Affymetrix arrays is analysed with the R, gcrma package and the visualised using KEGG.

Functionality

• Annotation
• Pathway Analysis

Instrument Data Type

• MS/LC-MS

Approaches

Computer Skills

Basic

Software Type

• Web App

Interface

• Web user interface

Operating System (OS)

• Unix/Linux
• Mac OS
• Windows

Language

Perl

Dependencies

N/A

Input Formats - Open

Peak list with ionisation mode and instrument error

Input Formats - Proprietary

N/A

Published

2008

Last Updated

2011

License

Paper

http://www.ncbi.nlm.nih.gov/pubmed/22815716

PMID

22815716