MarVis

Version: 2.0

Website

http://marvis.gobics.de/

Description

Marker Visualization (MarVis) - Pathway is an addition to the MarVis Suite, which provides metabolic pathway visualisation and MSEA. Pathway databases are implemented from KEGG and BioCyc. Three forms of SEA are available: entry-based (hypergeometric distribution), marker/feature-based (static or iterative hypergeometric distribution) and sample based analysis (rank-sum or Kolmogorov-Smirnov statistical tests). Custom databases can be imported in the .CSV format, as the KEGG/BioCyc pathways cannot be adjusted. Both transcriptomics and proteomics data can also be used in conjunction with the metabolomics data.

Functionality

• Pathway Analysis/ Metabolite Set Enrichment Analysis

Instrument Data Type

Approaches

• Metabolomics/Untargeted

Computer Skills

Medium

Software Type

• Suite

Interface

• Graphical user interface

Operating System (OS)

Windows XP/Vista/7/8

Language

Dependencies

N/A

Input Formats - Open

List of compound IDs

Input Formats - Proprietary

N/A

Published

2009

Last Updated

2014

License

Paper

http://www.ncbi.nlm.nih.gov/pubmed/25972773

PMID

25972773