| ALLocator |
Preprocessing |
MS/LC-MS/LC-ESI-MS |
|
| AMDORAP |
Preprocessing |
MS/LC-MS/Orbitrap LC-MS |
Untargeted |
| apLCMS |
Preprocessing |
MS/LC-MS/LC-FT-MS |
Untargeted |
| decoMS2 |
Preprocessing |
MS/LC-MS |
Untargeted |
| FeatureFinderMetabo |
Preprocessing |
MS/LC-MS/Centroid LC-MS |
|
| HayStack |
Preprocessing |
MS/LC-MS |
Untargeted |
| HCOR |
Preprocessing |
MS/LC-MS |
|
| Ideom |
Preprocessing |
MS/LC-MS |
|
| iMet-Q |
Preprocessing |
MS/LC-MS |
|
| intCor |
Preprocessing |
MS/LC-MS |
|
| LDA |
Preprocessing |
MS/LC-MS |
Lipidomics |
| MET-COFEA |
Preprocessing |
MS/LC-MS |
|
| MET-XAlign |
Preprocessing |
MS/LC-MS |
Untargeted |
| MetExtract |
Preprocessing |
MS/LC-MS/Centroid LC-MS |
Untargeted, Isotopic Labelling Analysis |
| MRM-DIFF |
Preprocessing |
MS/LC-MS/LC-QqQ-MS,MS/LC-MS/LC-QqQ-MS/MS |
Lipidomics |
| MS-DIAL |
Preprocessing |
MS/LC-MS/LC-MS/MS |
Untargeted |
| RAMClustR |
Preprocessing |
MS/LC-MS/LC-MS/MS |
|
| X13CMS |
Preprocessing |
MS/LC-MS |
Untargeted, Isotopic Labelling Analysis |
| xMSanalyzer |
Preprocessing |
MS/LC-MS |
Untargeted |
| cosmiq |
Preprocessing |
MS/LC-MS, MS/GC-MS |
Untargeted |
| MeltDB |
Preprocessing |
MS/LC-MS, MS/GC-MS/GC-MS/MS |
|
| Metab |
Preprocessing |
MS/LC-MS, MS/GC-MS |
|
| MetaDB |
Preprocessing |
MS/LC-MS, MS/GC-MS |
|
| MetAlign |
Preprocessing |
MS/LC-MS, MS/GC-MS |
Untargeted |
| metaMS |
Preprocessing |
MS/LC-MS, MS/GC-MS |
Untargeted |
| MetTailor |
Preprocessing |
MS/LC-MS, MS/GC-MS |
|
| MRMPROBES |
Preprocessing |
MS/LC-MS/LC-QqQ-MS, MS/GC-MS/GC-QqQ-MS |
|
| XCMS |
Preprocessing |
MS/LC-MS/LC-MS/MS, MS/GC-MS |
Untargeted |
| MET-IDEA |
Preprocessing |
MS/LC-MS, MS/GC-MS |
Targeted |
| TNO-DECO |
Preprocessing |
MS/LC-MS, MS/GC-MS |
Untargeted |
| TracMass2 |
Preprocessing |
MS/LC-MS, MS/GC-MS |
Untargeted |
| RANSY/RAMSY |
Preprocessing |
MS/LC-MS, MS/GC-MS, NMR |
|
| AMDIS |
Preprocessing |
MS/GC-MS |
|
| flagme |
Preprocessing |
MS/GC-MS |
|
| Maui-VIA |
Preprocessing |
MS/GC-MS |
|
| MET-COFEI |
Preprocessing |
MS/GC-MS |
|
| SIMAT |
Preprocessing |
MS/GC-MS/GC-MS - SIM |
Targeted |
| SpectConnect |
Preprocessing |
MS/GC-MS |
|
| TargetSearch |
Preprocessing |
MS/GC-MS |
Targeted |
| MetaboliteDetector |
Preprocessing |
MS/GC-MS |
Targeted, Untargeted |
| EasyLCMS |
Preprocessing, Annotation |
MS/LC-MS |
Targeted |
| MMSAT |
Preprocessing, Annotation |
MS/LC-MS/LC-MS SRM, MS/GC-MS/GC-MS SRM |
Targeted |
| LIMSA |
Preprocessing, Annotation |
MS/LC-MS, MS/DI-MS/DI-MS/MS |
Lipidomics |
| eRah |
Preprocessing, Annotation |
MS/GC-MS/GC-TOF/MS, MS/GC-MS/GC-qTOF/MS |
|
| MSeasy |
Preprocessing, Annotation |
MS/GC-MS |
|
| LipidXplorer |
Preprocessing, Annotation |
MS/DI-MS/DI-MS/MS |
Lipidomics |
| MetSign |
Preprocessing, Annotation |
MS/LC-MS, MS/DI-MS/DI-FT-ICR-MS |
|
| LipidQA |
Preprocessing, Post-processing, Annotation |
MS/DI-MS/DI-MS/MS |
Lipidomics |
| MathDAMP |
Preprocessing, Post-processing, Annotation |
MS/CE-MS, MS/GC-MS |
Untargeted |
| CFM-ID |
Annotation/Level 2a - Library Spectrum Match |
MS/LC-MS/LC-MS/MS |
|
| CSI:FingerID |
Annotation/MS/Level 2a - Library Spectrum Match |
MS/LC-MS/LC-MS/MS |
|
| FingerID |
Annotation/Level 2a - Library Spectrum Match |
MS/LC-MS |
|
| Lipid-Pro |
Annotation/Level 2a - Library Spectrum Match |
MS/LC-MS/LC-MS/MS |
Lipidomics |
| MAGMa |
Annotation/Level 2a - Library Spectrum Match |
MS/LC-MS/LC-MS/MS, MS/LC-MS/LC-MSn |
|
| MS2Analyzer |
Annotation/Level 2a - Library Spectrum Match |
MS/LC-MS/LC-MS/MS |
Untargeted |
| MetaBox |
Annotation/Level 2a - Library Spectrum Match |
MS/GC-MS |
|
| MyCompoundID |
Annotation/Level 2a - Library Spectrum Match |
MS |
|
| MetFrag |
Annotation/Level 2a - Library Spectrum Match |
MS/MSn |
|
| FragPred |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS |
Targeted |
| MetFamily |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS/LC-MS/MS |
Untargeted |
| MSFINDER |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS/LC-MS/MS |
Untargeted |
| mzOS |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS |
Untargeted |
| ProbMetab |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS |
|
| Metabolome Searcher |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS |
Untargeted |
| MetaboSearch |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS |
Untargeted |
| PUTMEDID-LCMS |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS/UPLC-MS |
|
| mzMatch |
Annotation/Level 3 - Tentative Candidates |
MS/LC-MS |
Untargeted |
| MS-LAMP |
Annotation/Level 3 - Tentative Candidates |
MS |
Lipidomics |
| VaLID |
Annotation/Level 3 - Tentative Candidates |
MS |
Lipidomics |
| MetFusion |
Annotation/Level 3 - Tentative Candidates |
MS/MSn |
|
| AStream |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/LC-MS |
Untargeted |
| CAMERA |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/LC-MS |
Untargeted |
| HR3 |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/LC-MS |
|
| MetiTree |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/LC-MS |
|
| MolFind |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/LC-MS/HPLC-MS |
|
| MZedDB |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/LC-MS/LC-ESI-MS |
Untargeted |
| Rdisop |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/FT-ICR-MS, MS/QTOF-MS |
|
| HAMMER |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/MSn |
|
| SIRIUS |
Annotation/Level 4 - Unequivocal Molecular Formula |
MS/MSn |
|
| ALEX |
Annotation |
MS/DI-MS/Orbitrap DI-MS |
Targeted, Lipidomics |
| MetaQuant |
Annotation, Other Tools |
MS/GC-MS |
Targeted |
| MassTRIX |
Annotation, Pathway Analysis |
MS/LC-MS |
|
| batchCorr |
Post-processing |
MS/LC-MS |
|
| EigenMS |
Post-Processing |
MS/LC-MS/LC-MS/MS |
|
| MetabR |
Post-Processing |
MS/LC-MS |
|
| MSPrep |
Post-Processing |
MS/LC-MS |
|
| crmn |
Post-Processing |
MS/LC-MS, MS/GC-MS |
|
| metabomxtr |
Post-Processing |
MS/LC-MS, MS/GC-MS |
Untargeted |
| MetNorm |
Post-Processing |
MS/LC-MS, MS/GC-MS, NMR |
|
| metabolomics |
Post-Processing, Statistical Analysis |
MS, NMR |
|
| muma |
Post-processing, Statistical Analysis |
MS, NMR |
|
| MetabolAnalyze |
Statistical Analysis |
MS, NMR |
|
| metaXCMS |
Statistical Analysis |
MS/LC-MS |
Untargeted |
| Ionwinze |
Statistical Analysis |
MS/LC-MS |
Untargeted |
| metaP |
Statistical Analysis, Pathway Analysis |
MS |
|
| Credential Features |
Other Tools/Experimental Optimisation |
MS/LC-MS |
Untargeted |
| MetShot |
Other Tools/Experimental Optimisation |
MS/LC-MS/LC-MS/MS |
Targeted |
| MetSizeR |
Other Tools/Experimental Optimisation |
MS, NMR |
Targeted |
| LICRE |
Other Tools/Feature Reduction |
MS/LC-MS/LC-MS/MS |
Targeted |
| IPO |
Other Tools/Software Optimisation |
MS/LC-MS |
Untargeted |
| MetaboQC |
Other Tools/Software Optimisation |
MS/LC-MS |
Untargeted |
| QCScreen |
Other Tools/Quality Assessment |
MS/LC-MS/Centroid LCHR-MS |
|
| GAVIN |
Other Tools |
MS/GC-MS |
Targeted |
| iontree |
Other Tools |
MS/LC-MS/LC-MS/MS, MS/DI-MS/DI-MS/MS |
|
| msPurity |
Other Tools |
MS/LC-MS/LC-MS/MS, MS/DI-MS/DI-MS/MS |
|
| MSClust |
Other Tools |
MS/LC-MS, MS/GC-MS |
|
| IosCor |
Other Tools |
MS |
Targeted |
| mzR |
Other Tools |
MS |
|
| ICT |
Other Tools |
MS/MS/MS |
|
| MetabNet |
Pathway Analysis |
MS/LC-MS |
Targeted |
| eMZed |
Workflow |
MS/LC-MS |
Untargeted |
| MAIT |
Workflow |
MS/LC-MS |
|
| MassCascade |
Workflow |
MS/LC-MS/LC-MS/MS, MS/LC-MS/LC-MSn |
|
| MetMSLine |
Workflow |
MS/LC-MS |
Untargeted |
| Workflow4Metabolomics |
Workflow |
MS/LC-MS |
|
| MAVEN |
Workflow |
MS/LC-MS |
Untargeted |
| Galaxy-M |
Workflow |
MS/LC-MS, MS/DI-MS |
|
| MZmine |
Workflow |
MS/LC-MS/LC-MS/MS, MS/GC-MS, MS/CE-MS |
Untargeted |
| Mass++ |
Workflow |
MS/LC-MS, MS/GC-MS |
|
| XCMS Online |
Workflow |
MS/LC-MS, MS/GC-MS |
Untargeted |
| MetaboAnalyst |
Workflow |
MS/LC-MS, MS/GC-MS, NMR |
|
| MetabolomeExpress |
Workflow |
MS/GC-MS |
|
| specmine |
Workflow |
MS/LC-MS, MS/GC-MS, NMR, IR, UV/VIS, Raman |
|