KMDA

Version: 1.0

Website

https://cran.r-project.org/web/packages/KMDA/

Description

Kernel-Based Metabolite Differential Analysis (KMDA) is a CRAN package, which provides a kernel-based score test to cluster metabolites between treatment groups, in order to handle missing values. There are two kernels: one distance-based and the other stratified, in order to capture both the discrete and continuous nature of metabolomics data.

Functionality

• Post-Processing

Instrument Data Type

• MS

Approaches

Computer Skills

Advanced

Software Type

R Package

Interface

Command line interface

Operating System (OS)

• Unix/Linux
• Mac OS
• Windows

Language

R

Dependencies

R (≥ 2.10)

Input Formats - Open

Peaklist (matrix)

Input Formats - Proprietary

N/A

Published

2014

Last Updated

2015

License

GPL-2 | GPL-3

Paper

https://www.ncbi.nlm.nih.gov/pubmed/25887233

PMID

25887233