GC‐MS - RASpicer/MetabolomicsTools GitHub Wiki

Software	Functionality	Instrument Data Type	Approaches
AMDIS	Preprocessing	MS/GC-MS
flagme	Preprocessing	MS/GC-MS
Maui-VIA	Preprocessing	MS/GC-MS
MET-COFEI	Preprocessing	MS/GC-MS
SIMAT	Preprocessing	MS/GC-MS/GC-MS - SIM	Targeted
SpectConnect	Preprocessing	MS/GC-MS
TargetSearch	Preprocessing	MS/GC-MS	Targeted
MetaboliteDetector	Preprocessing	MS/GC-MS	Targeted, Untargeted
MET-IDEA	Preprocessing	MS/GC-MS, MS/LC-MS	Targeted
TNO-DECO	Preprocessing	MS/GC-MS, MS/LC-MS	Untargeted
TracMass2	Preprocessing	MS/GC-MS, MS/LC-MS	Untargeted
eRah	Preprocessing, Annotation	MS/GC-MS/GC-TOF/MS MS/GC-MS/GC-qTOF/MS
MSeasy	Preprocessing, Annotation	MS/GC-MS
cosmiq	Preprocessing	MS/GC-MS, MS/LC-MS	Untargeted
MeltDB	Preprocessing	MS/GC-MS/GC-MS/MS, MS/LC-MS
Metab	Preprocessing	MS/GC-MS, MS/LC-MS
MetaDB	Preprocessing	MS/GC-MS, MS/LC-MS
MetAlign	Preprocessing	MS/GC-MS, MS/LC-MS	Untargeted
metaMS	Preprocessing	MS/GC-MS, MS/LC-MS	Untargeted
MetTailor	Preprocessing	MS/GC-MS, MS/LC-MS
MRMPROBES	Preprocessing	MS/GC-MS/GC-QqQ-MS, MS/LC-MS/LC-QqQ-MS
XCMS	Preprocessing	MS/GC-MS, MS/LC-MS/LC-MS/MS	Untargeted
RANSY/RAMSY	Preprocessing	MS/GC-MS, MS/LC-MS, NMR
MMSAT	Preprocessing, Annotation	MS/GC-MS/GC-MS SRM, MS/LC-MS/LC-MS SRM	Targeted
MathDAMP	Preprocessing, Post-processing, Annotation	MS/CE-MS, MS/GC-MS	Untargeted
MetaBox	Annotation/Level 2a - Library Spectrum Match	MS/GC-MS
MetaQuant	Annotation, Other Tools	MS/GC-MS	Targeted
MSClust	Other Tools	MS/GC-MS, MS/LC-MS
GAVIN	Other Tools	MS/GC-MS	Targeted
crmn	Post-Processing	MS/GC-MS, MS/LC-MS
metabomxtr	Post-Processing	MS/GC-MS, MS/LC-MS	Untargeted
MetNorm	Post-Processing	MS/GC-MS, MS/LC-MS, NMR
MetaboAnalyst	Workflow	MS/GC-MS, MS/LC-MS, NMR
Mass++	Workflow	MS/GC-MS, MS/LC-MS
MetabolomeExpress	Workflow	MS/GC-MS
MZmine	Workflow	MS/GC-MS, MS/LC-MS/LC-MS/MS, MS/CE-MS	Untargeted
specmine	Workflow	MS/GC-MS, MS/LC-MS, NMR, IR, UV/VIS, Raman
XCMS Online	Workflow	MS/GC-MS, MS/LC-MS	Untargeted