Shared Configuration Files - QuantGen/HPCC GitHub Wiki

To use our shared configuration files, paste the following two lines into your terminal and reconnect to the HPCC:

echo -e "\nsource /mnt/research/quantgen/tools/configfiles/bash/bashrc" >> ~/.bashrc
echo -e "\nsource /mnt/research/quantgen/tools/configfiles/bash/bash_profile" >> ~/.bash_profile

Currently, these files

• add our own modules to the HPCC module system
• automatically load software commonly used in the lab (e.g., R, PLINK), and
• make new files writable to the group to allow for better collaboration.

To run R simply type R. To run PLINK simply type plink.

For other installed software check the module avail output.