Alireza Spring Summer 2015 priorities - QIICR/ProjectIssuesAndWiki GitHub Wiki

1. Submit BAT paper

• later (while at UBC?): revisit python code to improve
• Status: get edits from Nina - June 5, send to all co-authors week after

2. DWModeling

• R^2 for subset of b-values: https://github.com/SlicerProstate/SlicerProstate/issues/2 DONE 22 May

3. Prostate segmenter

• resolve the issue related to ordering of split directions in patient space DONE 28 May
• Initialize IS axis as the vector through centroids of first/last segmentations on axial slices?
• https://github.com/mehrtash/ProstateSegmenter

4. Slicer annotations

• In-slice annotations: http://www.na-mic.org/Bug/view.php?id=3998 - effort: minimal
• Orientation figure: http://www.na-mic.org/Bug/view.php?id=2935 - effort: moderate, priority:moderate

5. PKModeling

• Heuristics to help with discarding invalid BAT values
• account for AIF BAT in the search process
• consider the use of averaged ROI curve after discarding voxels with low uptake to constraint the search
• add the option to prescribe S0 map and output S0 map generated

6. DICOM browser issues

• Delete series capability and popup menu: http://www.na-mic.org/Bug/view.php?id=3792 - effort: moderate, priority: high
• Warn the user about the warnings for loadable in Simple mode: http://www.na-mic.org/Bug/view.php?id=3726 - effort: moderate
• See https://github.com/commontk/CTK/blob/master/Libs/DICOM/Core/ctkDICOMDatabase.h
• Inventory of DICOM plugins/modalities
• from Steve: dicom files can only be imported from ascii-only paths