August 16, 2022 (Dev Meeting) - Project-MONAI/MONAI GitHub Wiki

Agenda:

#	Owner	Title	Time (min)
1	Behrooz	AI in Pathology Challenges	10
2	Behrooz	HoVerNet best dataset (Pannuke, ConSep, CoNIC, Lizard, etc.)	10
3	Behrooz	MetaTensor for pathology	30
4	Gigon	Support and apply ICC profile to the decompressed image	10

Attendees

Prerna Dogra, Ziyue Xu, Gigon Bae, Lee Cooper, Michael Boone, Behrooz Hashemian, Jeff Baumes, David Manthey, Shan Raza, Gregory Lee

Notes

• AI in Pathology Challenges:
  • Mayo Clinic STRIP AI Kaggle Challenge: providing a MONAI baseline
  • Once a challenge is finished, we should get in contact with the best solutions and help to contribute to MONAI. This is what we already want to do with https://neurips22-cellseg.grand-challenge.org.
• CoNIC dataset for HoVerNet but need to be double checked if it is the same as Lizard dataset.
• MetaTensor:
  • Affine is not being use in digital pathology community, so better to avoid having this a primary propterties.
  • use x and y resolution
  • having slide meta data matching OpenSlide
• Loading images at specific micron per pixel (mpp) rather than at specific level would be useful. Currently, cucim does not support that.

Action items:

PIC	Item
Behrooz/Shan	Sync with Simon on HoVerNet
Behrooz	Update the MetaTensor proposal and request for comments
Lee	Submit an issue on cucim repo for loading region at a specific mpp