April 12, 2022 (Dev Meeting) - Project-MONAI/MONAI GitHub Wiki
Agenda:
| # | Owner | Title | Time (min) |
|---|---|---|---|
| 1 | Sachi, David | Update on MONAI Label | 10 |
| 2 | Behrooz | MONAI whole slide image reading: #4107 | 10 |
| 3 | All | MONAI Patch Datasets, related topics #4090, #3608, #4099 | 20 |
| 4 | All | How to contribute | 20 |
Attendees:
- MONAI Label Pathology: Sachi, David, Andres
- MONAI Pathology: Lee, Shan, Jeff, Johnny, Ziyue, Fernando, Behrooz
- CuCIM: Gigon, Michael
- Other MONAI WGs: Stephen
People who can review:
- Lee
- Shan
- Stephen (not pathology)
- Jonny
- Ziyue
- Behrooz
Notes
MONAI Label:
- David, have all set up in local env and querying what training model is available to populate DSA
- Sachi, improving performance in MONAI label
- Sachi, working on quPath connectivity (should have it by next week)
WSIReader:
- For microscopy we have 10s of channels or one channel
- region vs patch?
Types of input annotation data:
- image paths, level, size
- image paths, level, location, size
Patch Dataset requirements:
Action items:
| PIC | Item |
|---|---|
| Sachi | finishing quPath integration |
| Sachi | implement nuClick in MONAI Label |
| David | streamline the interface between DSA and MONAI Label |
| Gigon | adding single channel support in CuCIM |
| Behrooz | Finalize WSIReader |