Home - Pas-Kapli/mptp GitHub Wiki

Welcome to the mptp wiki! You will find here more documentation material regarding mptp. Including theoretical background, use cases, option and output explanation.

Theoretical aspects of PTP

mptp command-line options reference

Contact information and support

Beginner's guide to mptp

• Input data
  • Input tree
  • Estimation of minimum branch length
  • Outgroup
• Maximum likelihood delimitation
  • Overview of Command-line Parameters
  • Command line examples
  • Output files
• Markov-Chain Monte-Carlo
  • Overview of Command-line Parameters
  • Command line examples
  • Output files
  • Support values and credible intervals
    • Average Support Values (ASV)
    • Average Standard Deviation of Delmitation Support Values (ASDDSV)
    • Credible Intervals
  • Examples of convergence

(m)PTP Tutorial