How To's and Examples - PacificBiosciences/DevNet GitHub Wiki

Here are several "How To" examples of downstream analysis of PacBio® datasets or working with the SMRT® Analysis software. Each example shows how you can take output from the PacBio System and perform biologically meaningful analysis or integrate with the software with a script or tool. How To's may come with downloadable scripts and data files, sometimes available as a dataset, and sometimes more ad hoc. Some push the boundaries into new application areas, whereas others address more routine questions you may encounter.

Learn how to:

Analyze barcoded samples
[Detect base modifications with SMRT Sequencing](Detect Base Modifications with SMRT Sequencing)
[Detect variants with targeted resequencing: EGFR-MET](EGFR-MET Amplicons)
[Write a custom SMRT Pipe module](Write a Custom SMRT Pipe module)
De Novo Assembly Methods
[Identify minor species: BCR-ABL fusion protein](BCR-ABL Fusion Protein)
[Transcriptome Analysis] (https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Transcriptome-Analysis)