Base Modification Datasets and Software - PacificBiosciences/DevNet GitHub Wiki

A growing number of datasets and software tools showcase the capability of SMRT® Sequencing to detect DNA base modifications, including methylation.

For more base modification content, see the PacBio basemod application page.

See also the full Datasets, [Examples](How To's and Examples) and [Compatible Software](Compatible Software) pages.

Datasets

  • [The Methylomes of Six Bacteria](The Methylomes of Six Bacteria)
  • [Statistical Modeling of Enzyme Kinetics for Base Modification Detection](CRF for Base Modification)
  • [E. coli K12 MG1655 Methylome](E coli K12 MG1655 Methylome)

Examples and How-To's

  • [Detect base modifications with SMRT Sequencing](Detect Base Modifications with SMRT Sequencing)

Software Tools