4.1 Conversion of mzIdentML file to mzTab - PRIDE-Utilities/ms-data-core-api GitHub Wiki

MzIdentMLControllerImpl mzIdentMLController = new MzIdentMLControllerImpl(inputFile);
AbstractMzTabConverter mzTabconverter = new MzIdentMLMzTabConverter(mzIdentMLController);
MZTabFile mzTabFile = mzTabconverter.getMZTabFile();
MZTabFileConverter checker = new MZTabFileConverter();
checker.check(mzTabFile);