3.2 How to execute protein inference - PRIDE-Archive/pride-inspector GitHub Wiki

The PRIDE Inspector provides as home screen were the user can select the option of opening the identification file, PRIDE XML, mzIdentML or mzTab:

If the user provides an mzIdentML without protein inference information the tool will popup a message to run the protein inference algorithm:

When the algorithm finish the protein panel shows the list of identified proteins, including the new protein groups and the proteins than bellows to them, the "Show Protein Inference Option" provides a new popup with the protein inference visualisation:

The final aim of the pride-protein-inference library and PRIDE Inspector tool is to show and present the inference information to the final users. Especially the information for each group and the number of PSMs and peptides shared by interested proteins can be seen using the Protein Inference Visualisation: