Run Time and Miscellaneous Features - PECAplus/Perseus-PluginPECA GitHub Wiki

Run Time

See Parameters and Files used

The run time using a Windows 10 Home with Intel(R) Core(TM) i7-4710HQ CPU @2.50GHz, 16GB DDR3L SDRAM:

  • PECA Core (2130 genes, 8 time points) ~48 minutes

  • PECA-N (2130 genes, 8 time points) ~80 minutes

  • PECA-pS (1231 genes, 7 time points) ~55 minutes

  • PECA-R (1231 genes, 7 time points) ~45 minutes

NOTE: PECA-N should take approximately twice as long as PECA Core since PECA-N runs MCMC twice.

Progress Bar on Perseus

PECA consists of 2 major tasks: MCMC and CPS calculations, each taking up 50% of the progress bar shown on the bottom right corner (the actual run time is not 50/50 for each).

The bottom left corner shows a ratio of current iterations / total iterations.