Nextstrain Pathogen Evolution - OpenSourceSarsCoV2/LivingResourceReview GitHub Wiki

Short description

Nextstrain is an open source, interactive data visualisation platform that provides “real-time tracking of pathogen evolution” via the analysis of sequencing data. The tools used to achieve this are freely available to use and modify, and have already been used to track the evolution of a range of pathogens including the seasonal flu, Zika virus, and the West Nile virus. In response to the current pandemic, Nextstrain is maintaining a SARS-CoV-2 phylogenetic tree based on the analysis of contributed sequencing data.

Links and references

Real-Time Tracking of Pathogen Evolution: https://nextstrain.org/