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Inputs

(we probably won't use all of these)

• Sars2: NC_045512.2 (https://www.ncbi.nlm.nih.gov/nuccore/NC_045512)
• Crassphage: NC_024711.1 (https://www.ncbi.nlm.nih.gov/nuccore/NC_024711.1)
• Bacteriophage T4: NC_000866 (https://www.ncbi.nlm.nih.gov/nuccore/NC_000866)
• E. coli: NC_000913 (https://www.ncbi.nlm.nih.gov/nuccore/NC_000913)
• Ebola: NC_002549 (https://www.ncbi.nlm.nih.gov/nuccore/NC_002549)
• Klebsiella phage K11 (https://www.ncbi.nlm.nih.gov/nuccore/194100415)
• Acidianus filamentous virus 1 (https://www.ncbi.nlm.nih.gov/nuccore/45655866)
• ancient caribou feces virus (https://www.ncbi.nlm.nih.gov/nuccore/NC_024907.1)

Workflow

For each input sequence:

1. Run pebblesearch
2. Filter SRA run accessions based on some criteria
3. Build a BLAST target database representing the filtered SRA dataset
4. Run Elastic-BLAST on that dataset