(Optional - not part of MVP.)

The test environment that was used

Anaconda is more than is needed, but was used here to update the code. - Dan

• Ubuntu 18.04
• Anaconda-Distribution. Includes Pandas, matplotlib, Flask,. etc. Other packages must be installed:
  • https://anaconda.org/anaconda/virtualenv, conda install -c anaconda virtualenv
  • https://anaconda.org/anaconda/requests, conda install -c anaconda requests

To start Anaconda Navigator, I have needed to run this from Terminal every time I log in:

source ~/anaconda3/bin/activate root
anaconda-navigator

Installation

Install git and clone the repo:

sudo apt-get install git-core

git clone git://github.com/NCBI-Codeathons/Use-UMLS-and-Python-to-classify-website-visitor-queries-into-measurable-categories

Install Java JDK, if needed. To see if it's already installed,

java -version

If needed

sudo apt install default-jdk

Verify that the java compiler is there,

javac -version

Go into the repo. Run once,

cd Projects/Use-UMLS-and-Python-to-classify-website-visitor-queries-into-measurable-categories

./build.sh

Set UMLS_EMAIL environment variables using your UMLS license information,

export UMLS_EMAIL=YourRegisteredUmlsEmailAddress
export UMLS_USERNAME=YourRegisteredUmlsUserName
export UMLS_PASSWORD=YourRegisteredUmlsPwd

How to run the app

cd Projects/Use-UMLS-and-Python-to-classify-website-visitor-queries-into-measurable-categories

./run_backend_locally.sh

In your browser go to http://localhost:8080/

You can update the HTML by editing the files in /backend/templates/.

The response data is stored in /job_output/.