Model SEED Data - ModelSEED/Model-SEED-core GitHub Wiki

Object Tree

Annotation

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• name (STR)
• genome_uuid (STR)

Biochemistry

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• public (INT)
• name (STR)

Biomass

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)

Compartment

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)

Complex

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• searchname (STR)

Compound

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• abbreviation (STR)
• cksum (STR)
• unchargedFormula (STR)
• formula (STR)
• mass (NUM)
• defaultCharge (NUM)
• deltaG (NUM)
• deltaGErr (NUM)

CompoundSet

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• searchname (STR)
• class (STR)
• type (STR)

Feature

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• cksum (STR)
• genome_uuid (STR)
• start (INT)
• stop (INT)

Genome

Attributes

• uuid (STR)
• modDate (STR)
• locked TINYINT(1)
• public (INT)
• id (STR)
• name (STR)
• source (STR)
• type (STR)
• taxonomy (STR)
• cksum (STR)
• size (INT)
• genes (INT)
• gc (NUM)
• gramPositive (STR)
• aerobic (STR)

Mapping

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• public (INT)
• name (STR)
• biochemistry_uuid (STR)

Media

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• type (STR)

Model

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• public (INT)
• id (STR)
• name (STR)
• version (INT)
• type(STR)
• status (STR)
• reactions (INT)
• compounds (INT)
• annotations (INT)
• growth (NUM)
• current (INT)
• mapping_uuid (STR)
• biochemistry_uuid (STR)
• annotation_uuid (STR)

ModelFBA

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• model_uuid (STR)
• media_uuid (STR)
• options (STR)
• geneko (STR)
• reactionko (STR)

Reaction

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• abbreviation (STR)
• cksum (STR)
• equation (STR)
• deltaG (NUM)
• deltaGErr (NUM)
• reversibility (STR)
• thermoReversibility (STR)
• defaultProtons (NUM)
• compartment_uuid (STR)
• defaultTransproton (NUM)

ReactionRule

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• reaction_uuid (STR)
• compartment_uuid (STR)
• direction (STR)
• transprotonNature (STR)

ReactionSet

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• searchname (STR)
• class (STR)
• type (STR)

Reagent

Attributes

• reaction_uuid (STR)
• compound_uuid (STR)
• compartmentIndex (INT)
• coefficient (NUM)
• cofactor (INT)

Role

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• searchname (STR)
• feature_uuid (STR)

RoleSet

Attributes

• uuid (STR)
• modDate (STR)
• locked (INT)
• id (STR)
• name (STR)
• searchname (STR)
• class (STR)
• type (STR)