im_sprime_solved_s_prime - MoCoMakers/nf-airflow-dags GitHub Wiki

📊 Table: im_sprime_solved_s_prime

This table builds upon the raw dose-response data by adding computed efficacy metrics and a derived S' (S-prime) score, indicating a measure of drug effect strength or selectivity.

Column Name Data Type Description
id integer (Primary Key) Auto-incremented id
broad_id varchar(255) ID used to identify drug-batch combinations
depmap_id varchar(255) ID to identify a cell line
ccle_name varchar(1000) ID to identify a cell line composed of the cell line name and the tissue of origin
screen_id varchar(50) ID to identify a screen
upper_limit integer Limit of the concentration-response curve as it approaches infinity, normalized to 1
lower_limit double precision Limit of the concentration-response curve as concentration approaches zero
slope double precision *Refers to the steepness of the concentration-response curve *
r2 double precision Goodness of fit measure between concentration-response curve and replicate viability data
auc double precision Area under the concentration-response curve
ec50 double precision Concentration of inflection point of the concentration-response curve, EC50 stands for 'half maximal effective concentration"
ic50 double precision Concentration that corresponds to a viability of 50% on the concentration-response curve, IC50 stands for "half maximal inhibitory concentration"
name varchar(255) Name of drug or compound
moa varchar(1000) Broad Repurposing Hub mechanism of action annotation, see https://repo-hub.broadinstitute.org/repurposing-app
target varchar(1000) Broad Repurposing Hub gene target annotation, see https://repo-hub.broadinstitute.org/repurposing-app
disease_area varchar(1000) Broad Repurposing Hub disease area annotation, see https://repo-hub.broadinstitute.org/repurposing-app
indication varchar(1000) Broad Repurposing Hub indication annotation: for drug labeling indication refers to the specific disease, condition, or symptom for which the drug is approved by the FDA
smiles varchar(1500) Simplified molecular-input line-entry system molecular identifier
phase varchar(255) Broad Repurposing Hub latest-clinical phase annotation, refers to the stage of (regulatory) development, see https://repo-hub.broadinstitute.org/repurposing-app
passed_str_profiling boolean Indicator for problems identified by STR profiling, a type of data QC (epMap), note use only values with TRUE
row_name varchar(255) ID used to identify cell line or control barcode in data matrices
eff double precision The difference between concentration-response curve asymptotes (upper_limit - lower_limit), effetiveness maximum
eff_100 double precision EFF (effective maximum) times 100%, EFF as a percent
eff_ec50 double precision EFF as a percent divided by the EC50 in μM
s_prime double precision asinh transformation of EFF/EC%), asinh is a natural log-like transformation