im_sprime_solved_s_prime - MoCoMakers/nf-airflow-dags GitHub Wiki
im_sprime_solved_s_prime
📊 Table: This table builds upon the raw dose-response data by adding computed efficacy metrics and a derived S' (S-prime) score, indicating a measure of drug effect strength or selectivity.
Column Name | Data Type | Description |
---|---|---|
id |
integer (Primary Key) | Auto-incremented id |
broad_id |
varchar(255) | ID used to identify drug-batch combinations |
depmap_id |
varchar(255) | ID to identify a cell line |
ccle_name |
varchar(1000) | ID to identify a cell line composed of the cell line name and the tissue of origin |
screen_id |
varchar(50) | ID to identify a screen |
upper_limit |
integer | Limit of the concentration-response curve as it approaches infinity, normalized to 1 |
lower_limit |
double precision | Limit of the concentration-response curve as concentration approaches zero |
slope |
double precision | *Refers to the steepness of the concentration-response curve * |
r2 |
double precision | Goodness of fit measure between concentration-response curve and replicate viability data |
auc |
double precision | Area under the concentration-response curve |
ec50 |
double precision | Concentration of inflection point of the concentration-response curve, EC50 stands for 'half maximal effective concentration" |
ic50 |
double precision | Concentration that corresponds to a viability of 50% on the concentration-response curve, IC50 stands for "half maximal inhibitory concentration" |
name |
varchar(255) | Name of drug or compound |
moa |
varchar(1000) | Broad Repurposing Hub mechanism of action annotation, see https://repo-hub.broadinstitute.org/repurposing-app |
target |
varchar(1000) | Broad Repurposing Hub gene target annotation, see https://repo-hub.broadinstitute.org/repurposing-app |
disease_area |
varchar(1000) | Broad Repurposing Hub disease area annotation, see https://repo-hub.broadinstitute.org/repurposing-app |
indication |
varchar(1000) | Broad Repurposing Hub indication annotation: for drug labeling indication refers to the specific disease, condition, or symptom for which the drug is approved by the FDA |
smiles |
varchar(1500) | Simplified molecular-input line-entry system molecular identifier |
phase |
varchar(255) | Broad Repurposing Hub latest-clinical phase annotation, refers to the stage of (regulatory) development, see https://repo-hub.broadinstitute.org/repurposing-app |
passed_str_profiling |
boolean | Indicator for problems identified by STR profiling, a type of data QC (epMap), note use only values with TRUE |
row_name |
varchar(255) | ID used to identify cell line or control barcode in data matrices |
eff |
double precision | The difference between concentration-response curve asymptotes (upper_limit - lower_limit), effetiveness maximum |
eff_100 |
double precision | EFF (effective maximum) times 100%, EFF as a percent |
eff_ec50 |
double precision | EFF as a percent divided by the EC50 in μM |
s_prime |
double precision | asinh transformation of EFF/EC%), asinh is a natural log-like transformation |