maxATAC Wiki

This wiki is a work in progress.

The goals for this wiki are to:

1. Provide examples of core functions
2. Provide walkthroughs for core functions
3. Show example inputs/outputs from each of the functions.
4. Describe tests used to make sure the code is functioning.

This walkthrough is intended to guide the user from start to finish on how to run all aspects of maxATAC.

Pages

1. ATAC-seq Data Processing
2. Prepare Overview
3. Averaging Overview
4. Normalization Overview
5. Training Overview
6. Prediction Overview
7. Benchmarking Overview
8. Variants Overview