Supported Features - McIntosh-Lab/tvb-ukbb GitHub Wiki

Dataset Specific Features

Certain features of the pipeline are built for specific datasets and are therefore only supported in specific branches of the pipeline.

Cam-CAN

Age-specific segmentation

Inaccuracies in the grey matter mask may arise due to the presence of white matter pathology. If T2 FLAIR images are not available in your dataset, age-specific segmentation can be used to address these inaccuracies. Age-specific image classes are used as tissue priors for each subject's grey matter segmentation. Subject ages must be provided to the pipeline. See Customizing the Pipeline for details.

Gradient echo field maps

Some datasets include reverse phase-encoded B0 dMRI images for estimating the field map. If this is not available in your dataset, our pipeline supports dual echo-time gradient distortion correction using FSL’s FUGUE toolbox.

Task-based fMRI (tfMRI) processing

Currently, task-based fMRI data are minimally preprocessed but not further analyzed.

Unsupported Features

Currently, our pipeline does not support UKBB's bb_QC_COG. Any related outputs should not be used as is.