Inputs - McIntosh-Lab/tvb-ukbb GitHub Wiki

The TVB-UKBB pipeline has a robust file I/O implementation that allows it to capture data from any directory structure. This includes data in BIDS format, data in non-standard directory structures, and completely flat directory structures.

The file manager uses the regular expression-esque string matching syntax from BASH to capture files with filenames that match their respective pipelines, e.g. NIFTI files with pattern *T1*.nii.gz will be recognized and processed by the structural pipeline file manager.

Please note that if you'd like to re-process an previously processed subject (including failed processing), you will need to clear your subject's folder so that it only contains the rawdata subdirectory. The exception for this requirement is when reparcellating, in which case the subject folder can be left intact.

For more information on adding patterns to the file manager, see the page on modifying bb_file_manager.py to capture input files