Installation - MPI-Dortmund/transphire GitHub Wiki
External programs
To enjoy the full functionaly of TranSPHIRE, install the following programs:
IMOD 4.9: http://bio3d.colorado.edu/imod
MotionCor2 1.0.0/1.0.5/1.1.0: http://msg.ucsf.edu/em/software/motioncor2.html
SumMovie 1.0.2: http://grigoriefflab.janelia.org/unblur
CTER 1.0: http://sphire.mpg.de
CTFFIND 4.1.8/4.1.10: http://grigoriefflab.janelia.org/ctf
Gctf 1.06,1.18: https://www.mrc-lmb.cam.ac.uk/kzhang
crYOLO 1.0.4/1.0.5/1.1.0: http://sphire.mpg.de
Installation
TranSPHIRE needs an environment that includes Python version 3.6, QT version 5 and PyQt version 5.
Installation using Anaconda
https://www.anaconda.com/download/#linux
Create a new virtual environment
conda create -n transphire python=3.6 pyqt=5
Activate the environment
source activate transphire
or
conda activate transphire
Depending on your installation of anaconda.
Install transphire
pip install transphire
Installation inside your own environment that matches the requirements (Not recommended)
Install transphire
pip install transphire