Data folder structure - LeonieZ/ACCEPT GitHub Wiki

ACCEPT requires two folders to function: one which contains the samples and a second folder to save the output, the results produced by accept:

|-- some sample collection
   |-- sample 1
      |-- image 001.tif
      |-- image 002.tif
      |-- image 003.tif
   |-- sample 2
      |-- image 001.tif
      |-- image 002.tif
      |-- image 003.tif
   |-- sample 3
      |-- image 001.tif
      |-- image 002.tif
      |-- image 003.tif

|-- ACCEPT results
   |-- marker characterization
      |-- frames
      |-- output
   |-- full detection
      |--.... 

ACCEPT considers the folders individual samples when pointing it to a specific directory.