Overview

This following page is to slowly organize the pages dedicated to KBB related work.

Protocols

• dry-EEG data collection protocol: KBB Dry-EEG Data Collection Protocol

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• Most behavioral data is collected by tablets and then uploaded to KoboToolBox (cloud)
• A Script can then be used to download the data directly from KoboToolBox to a TIMES computer
• These data are then scored or preprocessed for additionally cleaning that requires manual inspection (screener data)
• The following behavioral data are not available through KoboToolBox:
  • Auditory Attention
  • Response Set
  • Narrative Task
• Receptive Vocabulary is in KoboToolBox, but is unable to be downloaded automatically due to conflicting versions in the questionnaire
• Additionally, EEG and Genetic data are not saved on KoboToolBox
• The master script above is automatically ran on Sunday night at 1:00 AM CST

Screening

This section covers all of the scripts used to get through the screening scoring process. The WorkFlow Part 2 script calls several of the scripts above, thus you can start at that code and go from there.

• A general summary of the scripts below and what they are doing:

• In depth CFM2-4 and Birbeck Epilepsy Scoring: KBB CFM2-4 and Birbeck Scoring

• In depth CFM5-17 and Birbeck Epilepsy Scoring: KBB CFM5-17 and Birbeck Scoring

• In depth CFM2-4 and CFM5-17 cleaning before matching: KBB CFM2-4 and CFM5-17 DD Data WorkFlow Part 1

• Fuzzy Matching HOH IDs for quality control purposes: KBB Fuzzy Matching HOH IDs

• Manually matching procedure: KBB CFM2-4 and CFM5-17 Matching WorkFlow Part 2

• Incorrect Tester Error: KBB Screener Tester Error

Physical Data

• Scoring Physical Data: Physical Data Scoring

Resting State

• To learn an overview of rsEEG KBB Resting-state EEG

Mismatch Negativity (MMN)

• To learn an overview of the MMN KBB MMN

• To lean more in depth about the creation of the MMN KBB MMN (In depth)

• To learn about the trigger codes used for the MMN KBB MMN Triggers (PsychoPy)

Continuous Performance Task (CPT)

• To learn an overview of the CPT KBB CPT

• To lean more in depth about the creation of the CPT KBB CPT (In depth)

• To learn about the trigger codes used for the CPT KBB CPT Triggers (PsychoPy)

Final Trigger Codes (MMN & CPT in Zambia)

• The MMN & CPT trigger code used in Zambia KBB MMN & CPT Triggers used in Zambia

Neuroimaging Pilot

Resting-state EEG (Eyes Open and Closed)

• Preprocessing resting-state EEG data: KBB rsEEG Preprocessing (Manually)

• Running FFT on the clean rsEEG data: KBB rsEEG FFT

• Visualizing the rsEEG power spectrum: KBB rsEEG Power Spectrum

Mismatch Negativity (MMN)

• Preprocessing MMN EEG data: KBB MMN Preprocessing (Manually)

• Developing the MMN ERPs: KBB Developing MMN ERPs

• Visualizing the MMN in R: KBB Visualizing the MMN

Identifying EEG Sample

• This is the first attempt to identify who from our recruited subjects is eligible for dry-EEG: KBB dry-EEG Sample Redesign

Creating the Parent Reports

• This is a guide for how the parent reports are constructed: KBB Parent Reports Outlined

Analyses

• Different types of CFM data analyses: KBB Analyzing CFM data