| 1/24/2024 |
Introduction |
|
| Module 1 |
|
|
| 1/29/2024 |
Introduction to Plant Genomics |
M1_Slides_1 |
| 1/31/2024 |
Introduction to Biological Computing |
M1_Slides_2 |
| 2/05/2024 |
Writing a Scientific Manuscript & Introduction to Command Line |
M1_Slides_3 |
| 2/07/2024 |
Introduction to Command Line 1 |
M1_Lab 1 |
| 2/12/2024 |
Introduction of Command Line 2 |
M1_Lab 2 |
| Module 2 |
|
|
| 2/14/2024 |
DNA and RNA |
M2_Slides_1 |
| 2/19/2024 |
Data Types in Genomics |
M2_Slides_2 |
| 2/21/2024 |
Sassafras Genome Assembly Lab 1 |
M2_Lab_1 |
| 2/26/2024 |
Sequencing and Coverage |
M2_Slides_3 |
| 2/28/2024 |
HiFiasm Assembly and Stats |
M2_Lab_2 |
| 3/04/2024 |
K-mer |
M2_Slides_4 |
| 3/06/2024 |
HiFiasm Assembly and Stats (Continued) |
M2_Lab_2 |
| 3/11/2024 |
Spring Break |
|
| 3/13/2024 |
Spring Break |
|
| 3/18/2024 |
Mid-Term |
|
| 3/20/2024 |
Mid-Term |
|
| 3/25/2024 |
Genome Assesment |
M2_Lab_3 |
| 3/27/2024 |
Scaffolding |
M2_Lab_4 |
| 4/01/2024 |
Interacting with Hi-C & SyRi |
M2_Lab_5 |
| Module 3 |
|
|
| 4/03/2024 |
Genome Annotation |
M3_Slides_1 |
| 4/08/2024 |
RepeatModler |
M3_Lab_1 |
| 4/10/2024 |
RepeatModler & RepeatMasker |
M3_Slides_2 |
| 4/15/2024 |
RNAseq |
M3_Slides_3 |
| 4/17/2024 |
Mapping RNAseq Data |
M3_Lab_2 |
| 4/22/2024 |
BRAKER |
M3_Slides_4 |
| 4/24/2024 |
BRAKER3 |
M3_Lab_3 |
| 4/29/2024 |
EnTAP |
M3_Lab_4 |
| 5/01/2024 |
EnTAP |
M3_Slides_5 |
|
Final Exam |
|