modules_conda - Karthikeyan-Lab-Caltech/Wiki GitHub Wiki

module avial - list software

module load - activate software

Useful Modules

hmmer

Everyone should have a conda installation either in their home direcotory or within /resnick/groups/enviromics/$USER. The installations should be miniconda (not anaconda, thats too big) or micromamba (prefered).

Micromamba Install

Micromamba wiki

Install Instructions:

"${SHELL}" <(curl -L micro.mamba.pm/install.sh)

If using micromamba it is a good idea to add alias conda='mamba into .bashrc file

conda create -n envname - create new conda enviroment

conda env create -f environment.yml - export new conda enviroment

I havent not gotten any singluarity code to work lol.