SessionInfo - Kan-E/RNAseqChef GitHub Wiki
sessionInfo()
R version 4.3.0 (2023-04-21 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 22621)
Matrix products: default
locale:
[1] LC_COLLATE=Japanese_Japan.utf8 LC_CTYPE=Japanese_Japan.utf8 LC_MONETARY=Japanese_Japan.utf8
[4] LC_NUMERIC=C LC_TIME=Japanese_Japan.utf8
time zone: Asia/Tokyo
tzcode source: internal
attached base packages:
[1] grid stats4 tools stats graphics grDevices utils datasets methods base
other attached packages:
[1] colorspace_2.1-0 org.At.tair.db_3.17.0 org.Ss.eg.db_3.17.0
[4] org.Sc.sgd.db_3.17.0 org.Pt.eg.db_3.17.0 org.Mmu.eg.db_3.17.0
[7] org.Gg.eg.db_3.17.0 org.Dr.eg.db_3.17.0 org.Cf.eg.db_3.17.0
[10] org.Bt.eg.db_3.17.0 JASPAR2020_0.99.10 BiocParallel_1.34.0
[13] monaLisa_1.6.0 biomaRt_2.56.0 umap_0.2.10.0
[16] dorothea_1.12.0 clusterProfiler.dplyr_0.0.2 BiocManager_1.30.20
[19] shinyjs_2.1.0 plotly_4.10.1 shinyBS_0.61.1
[22] ComplexHeatmap_2.16.0 genefilter_1.82.0 msigdbr_7.5.1
[25] DOSE_3.26.0 enrichplot_1.20.0 clusterProfiler_4.8.0
[28] org.Xl.eg.db_3.17.0 org.Ce.eg.db_3.17.0 org.Dm.eg.db_3.17.0
[31] org.Rn.eg.db_3.17.0 org.Mm.eg.db_3.17.0 org.Hs.eg.db_3.17.0
[34] AnnotationDbi_1.62.0 DEGreport_1.36.0 qvalue_2.32.0
[37] IHW_1.28.0 edgeR_3.42.0 limma_3.56.0
[40] ggnewscale_0.4.8 EBSeq_1.40.0 testthat_3.1.7
[43] gplots_3.1.3 blockmodeling_1.1.4 DESeq2_1.40.0
[46] SummarizedExperiment_1.30.0 Biobase_2.60.0 MatrixGenerics_1.12.0
[49] matrixStats_0.63.0 GenomicRanges_1.52.0 GenomeInfoDb_1.36.0
[52] IRanges_2.34.0 S4Vectors_0.38.0 BiocGenerics_0.46.0
[55] cowplot_1.1.1 gridExtra_2.3 ggplotify_0.1.0
[58] ggdendro_0.1.23 ggrepel_0.9.3 venn_1.11
[61] ggpubr_0.6.0 lubridate_1.9.2 forcats_1.0.0
[64] stringr_1.5.0 dplyr_1.1.2 purrr_1.0.1
[67] readr_2.1.4 tidyr_1.3.0 tibble_3.2.1
[70] ggplot2_3.4.2 tidyverse_2.0.0 multcomp_1.4-23
[73] TH.data_1.1-2 MASS_7.3-59 survival_3.5-5
[76] mvtnorm_1.1-3 rstatix_0.7.2 gdata_2.18.0.1
[79] DT_0.27 shiny_1.7.4
loaded via a namespace (and not attached):
[1] igraph_1.4.2 Formula_1.2-5
[3] zlibbioc_1.46.0 tidyselect_1.2.0
[5] bit_4.0.5 doParallel_1.0.17
[7] clue_0.3-64 lattice_0.21-8
[9] rjson_0.2.21 blob_1.2.4
[11] parallel_4.3.0 dichromat_2.0-0.1
[13] seqLogo_1.66.0 png_0.1-8
[15] cli_3.6.1 ProtGenerics_1.32.0
[17] askpass_1.1 openssl_2.0.6
[19] BiocIO_1.10.0 lpsymphony_1.28.0
[21] shadowtext_0.1.2 curl_5.0.0
[23] mime_0.12 evaluate_0.20
[25] tidytree_0.4.2 stringi_1.7.12
[27] backports_1.4.1 XML_3.99-0.14
[29] httpuv_1.6.9 magrittr_2.0.3
[31] rappdirs_0.3.3 splines_4.3.0
[33] jpeg_0.1-10 ggraph_2.1.0
[35] bcellViper_1.36.0 stabs_0.6-4
[37] ggbeeswarm_0.7.1 logging_0.10-108
[39] DBI_1.1.3 jquerylib_0.1.4
[41] withr_2.5.0 brio_1.1.3
[43] tidygraph_1.2.3 rtracklayer_1.60.0
[45] htmlwidgets_1.6.2 plyranges_1.20.0
[47] annotate_1.78.0 reticulate_1.28
[49] VariantAnnotation_1.46.0 zoo_1.8-12
[51] XVector_0.40.0 knitr_1.42
[53] TFBSTools_1.38.0 TFMPvalue_0.0.9
[55] timechange_0.2.0 foreach_1.5.2
[57] fansi_1.0.4 patchwork_1.1.2
[59] caTools_1.18.2 data.table_1.14.8
[61] ggtree_3.8.0 R.oo_1.25.0
[63] poweRlaw_0.70.6 psych_2.3.3
[65] RSpectra_0.16-1 ggrastr_1.0.1
[67] gridGraphics_0.5-1 ellipsis_0.3.2
[69] lazyeval_0.2.2 yaml_2.3.7
[71] crayon_1.5.2 RColorBrewer_1.1-3
[73] tweenr_2.0.2 later_1.3.0
[75] codetools_0.2-19 base64enc_0.1-3
[77] GlobalOptions_0.1.2 KEGGREST_1.40.0
[79] shape_1.4.6 Rsamtools_2.16.0
[81] filelock_1.0.2 foreign_0.8-84
[83] pkgconfig_2.0.3 xml2_1.3.4
[85] GenomicAlignments_1.36.0 aplot_0.1.10
[87] BSgenome_1.68.0 ape_5.7-1
[89] viridisLite_0.4.1 biovizBase_1.48.0
[91] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2 xtable_1.8-4
[93] interp_1.1-4 hwriter_1.3.2.1
[95] car_3.1-2 plyr_1.8.8
[97] httr_1.4.5 beeswarm_0.4.0
[99] htmlTable_2.4.1 broom_1.0.4
[101] checkmate_2.2.0 nlme_3.1-162
[103] HDO.db_0.99.1 dbplyr_2.3.2
[105] crosstalk_1.2.0 digest_0.6.31
[107] Matrix_1.5-4 farver_2.1.1
[109] tzdb_0.3.0 AnnotationFilter_1.24.0
[111] reshape2_1.4.4 yulab.utils_0.0.6
[113] viridis_0.6.2 DirichletMultinomial_1.42.0
[115] rpart_4.1.19 glue_1.6.2
[117] cachem_1.0.7 BiocFileCache_2.8.0
[119] polyclip_1.10-4 Hmisc_5.0-1
[121] generics_0.1.3 Biostrings_2.68.0
[123] chipseq_1.50.0 ConsensusClusterPlus_1.64.0
[125] mnormt_2.1.1 carData_3.0-5
[127] glmnet_4.1-7 gson_0.1.0
[129] utf8_1.2.3 graphlayouts_0.8.4
[131] gtools_3.9.4 fontawesome_0.5.1
[133] preprocessCore_1.62.0 ggsignif_0.6.4
[135] GenomeInfoDbData_1.2.10 R.utils_2.12.2
[137] RCurl_1.98-1.12 memoise_2.0.1
[139] TxDb.Hsapiens.UCSC.hg38.knownGene_3.17.0 rmarkdown_2.21
[141] soGGi_1.10.4 downloader_0.4
[143] scales_1.2.1 R.methodsS3_1.8.2
[145] reshape_0.8.9 rstudioapi_0.14
[147] cluster_2.1.4 hms_1.1.3
[149] munsell_0.5.0 vioplot_0.4.0
[151] fdrtool_1.2.17 rlang_1.1.0
[153] ggforce_0.4.1 circlize_0.4.15
[155] xfun_0.39 CNEr_1.36.0
[157] iterators_1.0.14 abind_1.4-5
[159] GOSemSim_2.26.0 treeio_1.24.0
[161] bitops_1.0-7 promises_1.2.0.1
[163] scatterpie_0.1.9 RSQLite_2.3.1
[165] sandwich_3.0-2 fgsea_1.26.0
[167] DelayedArray_0.25.0 GO.db_3.17.0
[169] compiler_4.3.0 admisc_0.31
[171] prettyunits_1.1.1 Rcpp_1.0.10
[173] progress_1.2.2 babelgene_22.9
[175] R6_2.5.1 fastmap_1.1.1
[177] fastmatch_1.1-3 vipor_0.4.5
[179] ensembldb_2.24.0 nnet_7.3-18
[181] gtable_0.3.3 KernSmooth_2.23-20
[183] latticeExtra_0.6-30 deldir_1.0-6
[185] htmltools_0.5.5 bit64_4.0.5
[187] rGREAT_2.2.0 lifecycle_1.0.3
[189] Gviz_1.44.0 restfulr_0.0.15
[191] sass_0.4.5 vctrs_0.6.2
[193] rsconnect_0.8.29 slam_0.1-50
[195] sm_2.2-5.7.1 ggfun_0.0.9
[197] pracma_2.4.2 bslib_0.4.2
[199] pillar_1.9.0 GenomicFeatures_1.52.0
[201] ShortRead_1.58.0 locfit_1.5-9.7
[203] jsonlite_1.8.4 GetoptLong_1.0.5