Pisces Tools 5.2.7 - Illumina/Pisces GitHub Wiki

The following applications are provided as-is to the community. Type "dotnet [application].dll -h" to see the available options.

• Hygea : beta release of Pisces indel realigner. Still in dev.
• VennVcf : Simple tool to take in two vcfs and get the intersection, disjoint sets, and consensus vcf (pooling the depths and recalling).
• CreateGenomeSizeFile : Creates the "GenomeSize.xml" file for a given genome (.fa). Useful if you want to use Pisces for custom genomes.