july_8_2019 - I2PC/scipion-courses GitHub Wiki
Course Material
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Presentation (Marta)
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Import Data (Roberto)
- Kahoot Link
- BlastP (search for homologues)
- Human haemoglobin
- 3D map: emd_3488.map, available directory Data
- sequence:
- PDB reference: 1pbx (antartic fish: Pagothenia bernacchii) link
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Coot Tutorial (Roberto)
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EMDB submission link (Marta)
====== 11:00
- Introduction to Model building (Marta), present model building
- Problem to solve: Hemoglobin (Marta), present tutorial data and aim 11:30
- Kahoot 000 SCIPION
- Import volume and sequence data (Roberto)
- 3D Map preprocessing (sharpening, unit cell) (Roberto) 13:00
14:00
- Structure Prediction by Sequence Homology. Searching for Homologues (web site) (Roberto)
- import reference atom struct 1, kahoot 100 15:00
- Moving from sequence to atomic structure scenario chimera modeller (Marta)
- Merging 3D Maps and Atomic Structures: Rigid Fitting (Marta)
- kahoot 200 16:00
16:30
- extra tutorial coot (Roberto)
- Refinement: Flexible fitting (Roberto), coot, refmac in each step validate (refmac if needed)
- real space refine (tomorrow?)
- Structure validation and comparison(Marta)(tomorrow?) 18:30
9:00
- Building the unit cell (Marta) use our very own beta
- The whole macromolecule (Marta) 1, EMDB (Marta) 11:00
11:30
- contacts (Roberto)
- Subunidad beta (work by yourself)
- survey? 13:00
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