Model building Agenda - I2PC/scipion-courses GitHub Wiki

Schedule and contents

*June 22nd:

9:30: Welcome and presentation of the course, dynamics and mentors. (R)
10:00: Introduction to model building in the context of cryo-EM and Scipion (M)
10:30: Introduction to Scipion (import data) and AWS (R)
11:30: Introduction to AlphaFold2 (Searching for prediction models) (M/R)
12:00: Break
12:15: Map preprocessing (R)
13:00: Searching models by homology (M)
13:30: Afternoon task proposal (M)

*June 23rd:

9:30: Review of contents and follow up of the afternoon task proposal. (M)
10:00: Kahoot (R)
10:15: Rigid fitting of initial models (M)
11:00: Flexible fitting (R-coot)
12:00: Break
12:15: Flexible fitting (continuation) and validation (M-phenix)
14:00: Afternoon task proposal

*June 24th:

9:30: Review of contents and follow up of the afternoon task proposal. (M)
9:45: Presentation of the course questionnaire (R)
10:00: Kahoot (R)
10:15: Building the model of the protein complex (M-join chains)
11:15: Break
11:30: Structure analysis: Chain contacts (R)
12:00: Structure analysis: Structure comparison (M)
12:30: Submission of structures (R-EMDB report)
13:00: Summary (R-kahoot)
13:30: INSTRUCT short message and farewell