Comparison_among_predictions - I2PC/scipion-courses GitHub Wiki
- Here we are going to compare the different types of predictions by AlphaFold, Modelangelo and homology modeling with the submitted structure of the human hemoglobin with PDB ID 5ni1.
- Import the published atomic structure: 5ni1 For details look at the Modeling tutorial and the protocol appendix
- Comparison among the published structure 5NI1 and AlphaFold, ModelAngelo and the homology modeling predictions: For details look at the appendix
Compare structures with: :
Recommended actions: 1.- Align any prediction to the published structure:
-
mmaker #put_here_modelId to #2/A
2.- Make movements easier with:
-
~cofr
3.- Select the same part of the structure:
-
sel #2/A:46-75
4.- At the end save session:
-
scipionss
You should see something like this:
Another way of superposing and comparing structures:
- Superposition of one structure to other: For details look at the appendix
- Superposition of AlphaFold prediction to 5NI1 structure
- Superposition Result, including RMSD before and after the superposition