Analysis_contacts - I2PC/scipion-courses GitHub Wiki

Chain contact analysis of the human Hgb protein components

COCaDA: Contact server for PDB entries and user's atomic structures:

  • Web Server for Interactive Analysis of Protein Interatomic Contacts: COCaDA. Check the Documentation to start practicing.

    Documentation

  • PDB entries: Explore Explore

  • Running COCaDA web: Enter the PDB ID in the PDB search bar Explore

  • Results: Results

  • Map of interactions between chains: Map

  • Showing interactions in PYMOL:

    Write in the terminal: pymol 5NI1_contacts.pse pymol