Scripts and entry points - HobnobMancer/cazy_webscraper GitHub Wiki
cazy_webscraper entry points
Entry points are the commands that are provided with a program, and can be called from the command-line to perform specific functions.
Current entry points
cazy_webscraper
- Scrapes CAZy and builds a new local CAZyme database or adds data to an existing CAZyme database
cazy_webscraper_get_gbk_sequences
- Retrieves protein sequences from GenBank for CAZymes in a local CAZyme database
cazy_webscraper_get_pdb_structures
- Retrieves structure files from PDB for CAZymes in a local CAZyme database
cazy_webscraper_extract_sequences
- Extract protein sequences from a local CAZyme database and writes them out to FASTA
Potential future entry points
cazy_webscraper_get_unprt_sequences
- Retrieves protein sequences from UniProt for CAZymes in a local CAZyme database
cazy_webscraper_get_unprt_annotations
- Retrieve proteomic data from UniProt for CAZymes in a local CAZyme database